ASAP v1: Automated Single-cell Analysis Pipeline
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  • Input file format
    Format asap small Example file:
    Genes	BAT1	BAT2	BAT3	BAT4	BAT5	BAT6	BAT7	BAT8	BAT9
    0610005C13RIK	0	0	0	0	0	0	0	0	0
    0610007N19RIK	328	0	0	3	54	4069	0	0	1
    0610007P14RIK	368	217	0	644	1126	0	0	0	6
    0610008F07RIK	0	0	0	0	0	0	0	0	0
    0610009B14RIK	0	0	0	0	0	0	0	0	0
    0610009B22RIK	5977	7325	4012	11152	0	0	1	10	8
    0610009D07RIK	4028	10272	13622	3534	3090	0	5	2	25
    0610009L18RIK	0	0	0	0	0	0	0	0	0
    0610009O20RIK	147	3	188	77	49	48	0	0	59
    
    
  • Batch file format
    Format batch small Example file:
    BAT1	BAT
    BAT2	BAT
    BAT3	BAT
    BAT4	BAT
    BAT5	BAT
    BAT6	BAT
    BAT7	BAT
    BAT8	BAT
    BAT9	BAT
    BAT10	BAT
    
    
  • Geneset file
    GMT format
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